getExpData: Obtain a data set according to a study name

In bhklab/RPharmacoDB: R interface to PharmacoDB

Description

getExpData requests a particular dataset according to user specified study

Usage

getExpData(cellline = NULL, drug = NULL, summary = FALSE, stats = NULL)

Arguments

cellline	[vector] vector of cell lines for which to obtain data if cellline=NULL and drug != NULL, then data for all celllines tested on that vector of drugs is returned.
drug	[vector] vector of drugs for which to obtain data if drug=NULL and cellline != NULL, then data for all drugs tested on the cellline vector returned if drug!=NULL and cellline !=NULL, then data for all experiments in the set cellline, drug pairs for which there is data is returned
summary	[boolean] whether or not to return summary data if summary=TRUE, summary data is returned if summary=FALSE, dose response data is returned default is summary=FALSE
stats	[vector] vector of summary statistics values to return default is stats=NULL because summary=FALSE

Value

list of data.frame containing data if found or NA if data does not exist

Examples

getExpData(cellline="HCC70") ## get all dose-response curves tested on HCC70
## Get the published IC50 values for all cell lines tested on Erlotinib or 17-AAG
getExpData(drug=c("Erlotinib", "17-AAG"), stats = "IC50_Published"))
## Get all summary statistics for experiments tested on MCF7 and 1321N1
## and with erlotinib or 17-AAG
getExpData(cellline = c("MCF7", "1321N1"), drug = c("erlotinib", "17-AAG"), summary = TRUE)

bhklab/RPharmacoDB documentation built on May 12, 2019, 8:26 p.m.