plotCurve: Plot radiation dose-response curve

In bhklab/RadioGx: Analysis of Large-Scale Radio-Genomic Data

Plot radiation dose-response curve

Description

This function plots doses of radiation against the cancer cell survival fractions thereby observed.

Usage

plotCurve(
  D,
  SF,
  pars,
  filename = "dose_response_plot.pdf",
  fit_curve = TRUE,
  SF_as_log = TRUE
)

Arguments

D	vector of radiation doses
SF	vector of survival fractions corresponding to the doses
pars	parameters (alpha, beta) in the equation SF = exp(-alpha * D - beta * D ^ 2)
filename	name of PDF which will be created by the function
fit_curve	should the graph include a linear-quadratic curve of best fit? Defaults to TRUE
SF_as_log	should SF be expressed in log10 on the graph? Defaults to TRUE

Value

nothing Function works by side effects only

Examples

plotCurve(c(0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10),
  c(1.1, 0.8, 0.7, 0.45, 0.15, -0.1, -0.1, -0.4, -0.65, -0.75, -1.1),
  filename = NULL)

bhklab/RadioGx documentation built on Oct. 6, 2023, 8:27 a.m.