Man pages for bhklab/ToxicoGx
Analysis of Large-Scale Toxico-Genomic Data
| availableTSets | Return a table of ToxicoSets available for download |
| checkTSetStructure | A function to verify the structure of a ToxicoSet |
| computeAUC | Computes the AUC for a Drug Dose Viability Curve |
| computeICn | Computes the ICn for any n in 0-100 for a Drug Dose Viability... |
| computeLimmaDiffExpr | Generic method for performing differential expression... |
| computeLimmaDiffExpr-ToxicoSet-method | Conduct differential expression analysis using the limma R... |
| dim-ToxicoSet-method | Get the dimensions of a ToxicoSet |
| downloadTSet | Download a ToxicoSet object |
| drugGeneResponseCurve | Compares gene expression for a specificed set of features... |
| drugPerturbationSig | Drug perturbation analysis |
| drugTimeResponseCurve | Compares viabilities at a given dose over different... |
| geneDrugPerturbation | Compute gene-drug associations |
| HCC_sig | HCC_sig dataset |
| logLogisticRegression | Fits curves of the form E = E_inf + (1 - E_inf)/(1 +... |
| showSigAnnot | Show the Annotations of a signature object |
| show-ToxicoSet-method | Show a ToxicoSet |
| show-ToxicoSig-method | Show ToxicoGx Signatures |
| subsetTo | A function to subset a ToxicoSet to data containing only... |
| sub-ToxicoSet-ANY-ANY-ANY-method | '[' |
| summarizeMolecularProfiles | Takes molecular data from a ToxicoSet, and summarises them... |
| summarizeSensitivityProfiles | Takes the sensitivity data from a ToxicoSet, and summarises... |
| TGGATESsmall | TGGATESsmall dataset |
| ToxicoSet | ToxicoSet constructor |
| ToxicoSet-accessors | Accessing and modifying information in a 'CoreSet' |
| ToxicoSet-class | Class to contain Toxico-genomic Data |
| ToxicoSig | ToxicoSig Constructor |
| updateObject-ToxicoSet-method | Update the ToxicoSet class after changes in it struture or... |
