showSigAnnot: Show the Annotations of a signature object

In bhklab/ToxicoGx: Analysis of Large-Scale Toxico-Genomic Data

Show the Annotations of a signature object

Description

This funtion prints out the information about the call used to compute the drug signatures, and the session info for the session in which the computation was done. Useful for determining the exact conditions used to generate signatures.

Usage

showSigAnnot(Sigs)

Arguments

Sigs	An object of the ToxicoSig Class, as returned by drugPerturbationSig

Value

Prints the ToxicoGx Signatures annotations to the output stream, and returns invisible NULL.

Examples

data(TGGATESsmall)
drug.perturbation <- drugPerturbationSig(TGGATESsmall, mDataType="rna", nthread=1, duration = "2",
     drugs = head(treatmentNames(TGGATESsmall)), features = fNames(TGGATESsmall, "rna")[seq_len(2)])
showSigAnnot(drug.perturbation)

bhklab/ToxicoGx documentation built on March 18, 2023, 6:44 a.m.