processPanCancerGeneSignatureFiles: Read pan-cancer gene signature files and merge them into a...

In bhklab/rPharmacoDI: PharmacoDB Data Ingestion - functions for converting pSets to PharmacoDB database tables

Read pan-cancer gene signature files and merge them into a 'data.table'

Description

Read pan-cancer gene signature files and merge them into a 'data.table'

Usage

processPanCancerGeneSignatureFiles(
  filePath,
  mDataType = c("rna", "cnv", "mutation"),
  ...,
  fileFormats = c("rds", "qs")
)

Arguments

filePath	'character(1)' Path to top level signature directory. This should contain a folder 'mDataType'.
mDataType	'character(1)' The molecular data type of the signatures.
...	Fall through arguments to ['BiocParllel::bplapply'].
fileFormats	'character' File formats to search in 'filePath' for, the dot should be excluded (e.g., rds not .rds, etc)

Value

'data.table' The gene signatures properly formatted to a single long format table.

bhklab/rPharmacoDI documentation built on Oct. 31, 2022, 11:06 a.m.