ctgPHYLset: The ctgPHYLset class

In bicbioeng/ctgPHYL: Package for Single-cell Data Visualization and Analysis

Description

The main class used by the ctgPHYL packages to hold PyClone output data and generated tree results.

Usage

ctgPHYLset()

Details

Methods that operate on ctgPHYLset objectsvcomprise the ctgPHYL workflow.

Value

a new, empty ctgPHYLset object to store parameters, inputs, and outputs

Fields

cellscapeData

A list containing the data to be used by generate_tree(treeType = "cellscape") in the ctgPHYL workflow

timescapeData

A list containing the data to be used by generate_tree(treeType = "timescape") in the ctgPHYL workflow

mapscapeData

A list containing the data to be used by generate_tree(treeType = "mapscape") in the ctgPHYL workflow

treeList

A list containing the simplified igraph representation of the trees generated by the ctgPHYL workflow

originalTrees

A list containing the trees generated by the ctgPHYL workflow, in their original formats

Examples

# create example ctgPHYLset
ctgPHYLset <- ctgPHYLset()

bicbioeng/ctgPHYL documentation built on April 13, 2020, 12:38 a.m.