get_lynx_enrichment: Enrichment using Lynx API
In bingqing-Xie/LynxEnrichR: Enrichment Analysis using Lynx Web Service
View source: R/Enrichment_lynx.R
get_lynx_enrichment R Documentation
Enrichment using Lynx API
Description
This function returns the enrichment results for given list of genes
for requested functional categories: disease, pathway, go_bp, go_cc, go_mf
Usage
get_lynx_enrichment(
categories = c("go_bp"),
genelist = c("AKT1", "CASK", "PXN"),
tax_id = "9606"
)
Arguments
categories
list of databases
genelist
list of genes
tax_id
taxonomy id, currently supports human: 9606 and mouse: 10040
Value
A dataframe of enriched functional categories with pValue, overlapped genes,
corrected pValue, and bayes factor
bingqing-Xie/LynxEnrichR documentation built on April 4, 2022, 1:57 p.m.
R Package Documentation
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View source: R/Enrichment_lynx.R
| get_lynx_enrichment | R Documentation |
Enrichment using Lynx API
Description
This function returns the enrichment results for given list of genes for requested functional categories: disease, pathway, go_bp, go_cc, go_mf
Usage
get_lynx_enrichment(
categories = c("go_bp"),
genelist = c("AKT1", "CASK", "PXN"),
tax_id = "9606"
)
Arguments
categories |
list of databases |
genelist |
list of genes |
tax_id |
taxonomy id, currently supports human: 9606 and mouse: 10040 |
Value
A dataframe of enriched functional categories with pValue, overlapped genes, corrected pValue, and bayes factor
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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