seurat_marker_enrich: Enrichment for single cell cluster markers
In bingqing-Xie/LynxEnrichR: Enrichment Analysis using Lynx Web Service
View source: R/Enrichment_lynx.R
seurat_marker_enrich R Documentation
Enrichment for single cell cluster markers
Description
This function returns the enrichment results for a single cell marker list
for pre-defined functional categories: pathway, go_bp, go_cc, go_mf
Usage
seurat_marker_enrich(markers, name, tax_id = "9606")
Arguments
markers
output from Seurat function, FindAllMarkers
name
prefix to save the enrichment results
tax_id
taxonomy id, currently supports human: 9606 and mouse: 10040
bingqing-Xie/LynxEnrichR documentation built on April 4, 2022, 1:57 p.m.
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View source: R/Enrichment_lynx.R
| seurat_marker_enrich | R Documentation |
Enrichment for single cell cluster markers
Description
This function returns the enrichment results for a single cell marker list for pre-defined functional categories: pathway, go_bp, go_cc, go_mf
Usage
seurat_marker_enrich(markers, name, tax_id = "9606")
Arguments
markers |
output from Seurat function, FindAllMarkers |
name |
prefix to save the enrichment results |
tax_id |
taxonomy id, currently supports human: 9606 and mouse: 10040 |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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