decorateID: Create a chemical taxonomy table for annotated metabolic...
In biobakery/Macarron: Prioritization of potentially bioactive metabolic features from epidemiological and environmental metabolomics datasets
decorateID R Documentation
Create a chemical taxonomy table for annotated metabolic features.
Description
Create a chemical taxonomy table for annotated metabolic features.
Usage
decorateID(input_annotations)
Arguments
input_annotations
a dataframe (features x annotations) containing the available feature annotations.
^^Column 1 must contain standard annotations such as HMDB ID or PubChem CID for
the subset of identified/annotated metabolic features.
Value
tax_df input_taxonomy-dataframe containing ID (HMDB or PubChem), chemical sub class and chemical class of annotated metabolic features.
Examples
prism_annotations = system.file("extdata", "demo_annotations.csv", package="Macarron")
annotations_df = read.csv(file = prism_annotations, row.names = 1)
input_taxonomy <- decorateID(annotations_df)
biobakery/Macarron documentation built on June 29, 2024, 7:58 a.m.
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| decorateID | R Documentation |
Create a chemical taxonomy table for annotated metabolic features.
Description
Create a chemical taxonomy table for annotated metabolic features.
Usage
decorateID(input_annotations)
Arguments
input_annotations |
a dataframe (features x annotations) containing the available feature annotations. ^^Column 1 must contain standard annotations such as HMDB ID or PubChem CID for the subset of identified/annotated metabolic features. |
Value
tax_df input_taxonomy-dataframe containing ID (HMDB or PubChem), chemical sub class and chemical class of annotated metabolic features.
Examples
prism_annotations = system.file("extdata", "demo_annotations.csv", package="Macarron")
annotations_df = read.csv(file = prism_annotations, row.names = 1)
input_taxonomy <- decorateID(annotations_df)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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