API for biobakery/SparseDOSSA2
A Statistical Model for Describing and Simulating Microbial Community Profiles
| Global functions | |
|---|---|
| EM | Source code |
| EM_CV | Source code |
| Rho | Source code |
| SparseDOSSA2 | Man page Source code |
| Stool_subset | Man page |
| TSS | Source code |
| Vectorize2 | Source code |
| a | Source code |
| a_to_g | Source code |
| a_to_u | Source code |
| a_to_u_marg | Source code |
| condition_ridge | Source code |
| control_copulasso | Source code |
| control_fit | Man page Source code |
| control_integrate | Man page Source code |
| copulasso | Source code |
| dloga | Source code |
| dloga_asum | Source code |
| dloga_forInt | Source code |
| dloga_old | Source code |
| du | Source code |
| dx | Source code |
| ea | Source code |
| eloga | Source code |
| eloga2 | Source code |
| enforce_corr | Source code |
| enforce_symm | Source code |
| estimate_errors | Source code |
| estimate_one_error | Source code |
| expit | Source code |
| fill_estimates_CV | Source code |
| filter_data | Source code |
| filter_params | Source code |
| fitCV_SparseDOSSA2 | Man page Source code |
| fit_F | Source code |
| fit_SparseDOSSA2 | Man page Source code |
| fit_depth | Source code |
| fit_featureParam | Source code |
| fit_oneFeatureParam | Source code |
| generate_a | Source code |
| generate_count | Source code |
| generate_depth | Source code |
| generate_featureParam | Source code |
| generate_feature_metadata_spike_df | Source code |
| get_diff | Source code |
| get_es | Source code |
| get_intLimits | Source code |
| get_s | Source code |
| get_sigmahat | Source code |
| iRho | Source code |
| integrand_dx | Source code |
| integrand_ea | Source code |
| integrand_eloga | Source code |
| integrand_eloga2 | Source code |
| integrate2 | Source code |
| log_dmvnorm | Source code |
| logit | Source code |
| lower_tri | Source code |
| make_CVfolds | Source code |
| mloga | Source code |
| params_a_to_x | Source code |
| ploga | Source code |
| pmvnorm2 | Source code |
| rZILogN_one | Source code |
| rcopulasso | Source code |
| solve_ridge | Source code |
| spike_a_metadata | Source code |
| spike_oneA_metadata | Source code |
| threshold_matrix | Source code |
| upper_tri | Source code |
