control_fit: Control options for fit_SparseDOSSA2 and fitCV_SparseDOSSA2

In biobakery/SparseDOSSA2: A Statistical Model for Describing and Simulating Microbial Community Profiles

Control options for fit_SparseDOSSA2 and fitCV_SparseDOSSA2

Description

Control options for fit_SparseDOSSA2 and fitCV_SparseDOSSA2

Usage

control_fit(
  maxit = 100,
  rel_tol = 0.01,
  abs_tol = 0.01,
  control_numint = list(),
  verbose = FALSE,
  debug_dir = NULL
)

Arguments

maxit	maximum number of EM iterations
rel_tol	relative change threshold in the log likelihood for algorithm convergence
abs_tol	absolute change threshold in the log likelihood for algorithm convergence
control_numint	a named list of control parameters for the numerical integrations during the E step. See help page for control_numint
verbose	whether or not detailed running messages should be provided
debug_dir	directory for intermediate output, such as the EM expectations and parameter values and during each step of the EM algorithm. Default to NULL in which case no such output will be generated

Value

a list of the same names

biobakery/SparseDOSSA2 documentation built on March 30, 2024, 9:26 p.m.