compute_clade_effects: Compute a clade effect
In biobakery/anpan: Quantifying Microbial Strain-Host Associations
View source: R/clade_effects.R
compute_clade_effects R Documentation
Compute a clade effect
Description
This function computes the average phylogenetic effect of members of a user-defined
clade against that of all non-members.
Usage
compute_clade_effects(
clade_members,
anpan_pglmm_result,
plot_difference = TRUE
)
Arguments
clade_members
a character vector listing members of the clade of interest
anpan_pglmm_result
a result list from anpan_pglmm()
plot_difference
logical indicating whether to plot 50
three computed variables
Value
a list of two tibbles
biobakery/anpan documentation built on July 26, 2024, 11:19 p.m.
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View source: R/clade_effects.R
| compute_clade_effects | R Documentation |
Compute a clade effect
Description
This function computes the average phylogenetic effect of members of a user-defined clade against that of all non-members.
Usage
compute_clade_effects(
clade_members,
anpan_pglmm_result,
plot_difference = TRUE
)
Arguments
clade_members |
a character vector listing members of the clade of interest |
anpan_pglmm_result |
a result list from |
plot_difference |
logical indicating whether to plot 50 three computed variables |
Value
a list of two tibbles
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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