plot_p_value_histogram: Make a p-value histogram
In biobakery/anpan: Quantifying Microbial Strain-Host Associations

plot_p_value_histogram

R Documentation

Make a p-value histogram

This function makes a p-value histogram from a collection of bug:gene glm fits.

plot_p_value_histogram(
  all_bug_terms,
  out_dir = NULL,
  plot_ext = "pdf",
  n_bins = 50
)

`all_bug_terms`	a data frame of bug:gene glm fits
`out_dir`	string giving the output directory
`plot_ext`	string giving the extension to use

The plot will be written out to p_value_histogram.<ext> in the specified output directory. The "aaa" is there for alphabetical superiority.

If you don't understand the purpose of this type of plot, this blog post by David Robinson has a lot of helpful information.

biobakery/anpan documentation built on Aug. 14, 2024, 8:19 a.m.

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