enrichment_in_relationships: enrichment_in_relationships

In biodataganache/leapR: Layered enrichment analysis of pathways R

enrichment_in_relationships

Description

enrichment_in_relationships function description is a general way to determine if a pathway is enriched in relationships (interactions, correlation) between its members # access through leapr wrapper

Usage

enrichment_in_relationships(
  geneset,
  relationships,
  idmap = NA,
  mode = "original",
  silence_try_errors = TRUE
)

Arguments

geneset	List of pathways in gmt format
relationships	table of relationship information, e.g. correlation
idmap	list of identifiers to use for mapping, the names of the items should agree with names of features in matrix
mode	allowable values are 'original' or anything else
silence_try_errors	boolean to silence errors

Value

table of enrichment statistics

biodataganache/leapR documentation built on July 16, 2025, 11:10 p.m.