Files in biodiversity-aq/OmicsMetaData
OmicsMetaData: an R-package for interoperable and re-usable biodiversity 'omics (meta)data
.DS_Store
.RData
.Rbuildignore
.Rhistory
.github/.gitignore
.github/CONTRIBUTING
.github/workflows/R-CMD-check.yaml
CONTRIBUTING
DESCRIPTION
NAMESPACE
R/.DS_Store
R/.Rapp.history
R/.Rhistory
R/Classes_Libraries.R
R/DataFormat_Utils.R
R/DataQC_Main_DwC.R
R/DataQC_Main_DwCgeneral.R
R/DataQC_Main_MIxS.R
R/DataQC_Utils.R
R/Format_sequenceData_ENA.R
R/General_Utils.R
R/Get_SequenceData_INSDC.R
R/OmicsMetaData.R
R/sysdata.rda
R/zzz.R
README.md
codemeta.json
data/.DS_Store
data/ENA_allowed_terms.rda
data/ENA_checklistAccession.rda
data/ENA_geoloc.rda
data/ENA_instrument.rda
data/ENA_select.rda
data/ENA_strat.rda
data/TaxIDLib.rda
data/TermsLib.rda
data/TermsSyn.rda
data/TermsSyn_DwC.rda
inst/CITATION
man/.DS_Store
man/DwC.event-class.Rd
man/DwC.occurrence-class.Rd
man/ENA_allowed_terms.Rd
man/ENA_checklistAccession.Rd
man/ENA_geoloc.Rd
man/ENA_instrument.Rd
man/ENA_select.Rd
man/ENA_strat.Rd
man/FileNames.to.Table.Rd
man/MIxS.metadata-class.Rd
man/OmicsMetaData.Rd
man/OmicsMetaData.help.Rd
man/TaxIDLib.Rd
man/TermsLib.Rd
man/TermsSyn.Rd
man/TermsSyn_DwC.Rd
man/check.valid.MIxS.metadata.Rd
man/check.valid.metadata.DwC.Rd
man/combine.data.Rd
man/combine.data.frame.Rd
man/commonTax.to.NCBI.TaxID.Rd
man/coordinate.to.decimal.Rd
man/dataQC.DwC.Rd
man/dataQC.DwC_general.Rd
man/dataQC.LatitudeLongitudeCheck.Rd
man/dataQC.MIxS.Rd
man/dataQC.TaxonListFromData.Rd
man/dataQC.TermsCheck.Rd
man/dataQC.completeTaxaNamesFromRegistery.Rd
man/dataQC.dateCheck.Rd
man/dataQC.eventStructure.Rd
man/dataQC.findNames.Rd
man/dataQC.generate.footprintWKT.Rd
man/dataQC.guess.env_package.from.data.Rd
man/dataQC.taxaNames.Rd
man/download.sequences.INSDC.Rd
man/eMoF.to.wideTable.Rd
man/find.dataset.Rd
man/get.BioProject.metadata.INSDC.Rd
man/get.ENAName.Rd
man/get.boundingBox.Rd
man/get.insertSize.Rd
man/get.sample.attributes.INSDC.Rd
man/multi.warnings.Rd
man/prep.metadata.ENA.Rd
man/renameSequenceFiles.Rd
man/show-DwC.event-method.Rd
man/show-DwC.occurrence-method.Rd
man/show-MIxS.metadata-method.Rd
man/sync.metadata.sequenceFiles.Rd
man/term.definition.Rd
man/wideTab.to.hierarchicalTab.Rd
man/wideTable.to.eMoF.Rd
man/write.MIxS.Rd
tests/.DS_Store
tests/testthat.R
tests/testthat/test_Classes_Libraries.R
tests/testthat/test_DataFormat_Utils.R
tests/testthat/test_DataQC_DwC.R
tests/testthat/test_DataQC_Main_MIxS.R
tests/testthat/test_DataQC_Utils.R
tests/testthat/test_Format_sequenceData_ENA.R
tests/testthat/test_General_Utils.R
tests/testthat/test_Get_SequenceData_INSDC.R
tests/testthat/test_OmicsMetaData.R
vignettes/.gitignore
vignettes/Background.Rmd
vignettes/General_Overview.Rmd
vignettes/Metadata_standardization.Rmd
vignettes/Perpare_data_for_archiving.Rmd
vignettes/Retrieving_online_data.Rmd
