dataQC.completeTaxaNamesFromRegistery: Complete a list of taxonomic names with information form an...
In biodiversity-aq/OmicsMetaData: OmicsMetaData: an R-package for interoperable and re-usable biodiversity 'omics (meta)data
Description
Usage
Arguments
Details
Value
Author(s)
See Also
Examples
Description
complete a list of taxonomic names by looking-up missing information on an accepted taxonomic registery
Usage
1
dataQC.completeTaxaNamesFromRegistery(taxaNames)
Arguments
taxaNames
a character vector. A list with the taxonomic names to look for
Details
using the API-client connection to the World Registry of Marine Species (WORMS), additional taxonomic information can be added to an existing list of taxa. This function is a wrapper of the wm_name2id and wm_record functions in the worrms package
Value
a dataframe with the following fields:scientificName, scientificNameID, aphID, kingdom, phylum, class, order, family, genus, specificEpithet, scientificNameAuthorship, namePublishedInYear
Author(s)
Maxime Sweetlove CC-0 2020
See Also
Other quality control functions:
dataQC.LatitudeLongitudeCheck(),
dataQC.TaxonListFromData(),
dataQC.TermsCheck(),
dataQC.dateCheck(),
dataQC.eventStructure(),
dataQC.findNames(),
dataQC.generate.footprintWKT(),
dataQC.guess.env_package.from.data(),
dataQC.taxaNames()
Examples
1
dataQC.completeTaxaNamesFromRegistery("Aulacoseira")
biodiversity-aq/OmicsMetaData documentation built on Dec. 19, 2021, 9:44 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Details Value Author(s) See Also Examples
Description
complete a list of taxonomic names by looking-up missing information on an accepted taxonomic registery
Usage
1 | dataQC.completeTaxaNamesFromRegistery(taxaNames)
|
Arguments
taxaNames |
a character vector. A list with the taxonomic names to look for |
Details
using the API-client connection to the World Registry of Marine Species (WORMS), additional taxonomic information can be added to an existing list of taxa. This function is a wrapper of the wm_name2id and wm_record functions in the worrms package
Value
a dataframe with the following fields:scientificName, scientificNameID, aphID, kingdom, phylum, class, order, family, genus, specificEpithet, scientificNameAuthorship, namePublishedInYear
Author(s)
Maxime Sweetlove CC-0 2020
See Also
Other quality control functions:
dataQC.LatitudeLongitudeCheck(),
dataQC.TaxonListFromData(),
dataQC.TermsCheck(),
dataQC.dateCheck(),
dataQC.eventStructure(),
dataQC.findNames(),
dataQC.generate.footprintWKT(),
dataQC.guess.env_package.from.data(),
dataQC.taxaNames()
Examples
1 | dataQC.completeTaxaNamesFromRegistery("Aulacoseira")
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.