classify: Classify DAPI
In bioimaginggroup/nucim: Nucleome Imaging Toolbox
classify R Documentation
Classify DAPI
Description
Classify DAPI
Usage
classify(blue, mask, N, beta = 0.1, z = 1/3, silent = TRUE)
Arguments
blue
DAPI channel (image)
mask
mask (image)
N
number of classes
beta
smoothing parameter used in potts model (default: 0.1)
z
scaling parameter: size of voxel in X-/Y-direction divided by the size of voxel in Z-direction (slice scaling parameter: size of voxel in X-/Y-direction divided by the size of voxel in Z-direction (slice thickness))
silent
boolean. Should algorithm be silent?
Value
image with classes
bioimaginggroup/nucim documentation built on Sept. 6, 2022, 12:15 p.m.
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| classify | R Documentation |
Classify DAPI
Description
Classify DAPI
Usage
classify(blue, mask, N, beta = 0.1, z = 1/3, silent = TRUE)
Arguments
blue |
DAPI channel (image) |
mask |
mask (image) |
N |
number of classes |
beta |
smoothing parameter used in potts model (default: 0.1) |
z |
scaling parameter: size of voxel in X-/Y-direction divided by the size of voxel in Z-direction (slice scaling parameter: size of voxel in X-/Y-direction divided by the size of voxel in Z-direction (slice thickness)) |
silent |
boolean. Should algorithm be silent? |
Value
image with classes
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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