find.spots.file | R Documentation |
Detects spots for one file
find.spots.file( file, dir, color, thresh = NULL, thresh.auto = FALSE, thresh.quantile = 0.9, filter = NULL, cores = 1 )
file |
file |
dir |
directory for results |
color |
which color, images have to be in folder with color name |
thresh |
threshold |
thresh.auto |
Logical. Find threshold automatically? |
thresh.quantile |
numeric. use simple |
filter |
2d-filter to use before spot detection |
cores |
number of cores to use in parallel (with parallel package only) |
spot images in spot-color/, number of spots as txt files in spot-color/
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