R/imports.R

In bioinfo-pf-curie/cookieCrispR: Downstream analysis of Crispr screening counts data

#' @import shiny
#' @import shinydashboard
#' @importFrom grDevices dev.off pdf
#' @importFrom graphics plot
#' @importFrom naniar replace_with_na_all
#' @importFrom readxl read_excel
#' @importFrom utils read.table write.csv
#' @importFrom dplyr rename select mutate group_by ungroup full_join filter arrange case_when inner_join summarise first left_join
#' @importFrom tidyr gather separate spread nest replace_na
#' @importFrom forcats fct_reorder
#' @importFrom stringr str_remove str_detect
#' @importFrom ggplot2 theme position_jitterdodge ggplot position_dodge scale_fill_viridis_c geom_boxplot geom_abline facet_grid facet_wrap geom_col geom_line coord_equal aes labs .data vars ylab xlim
#' @importFrom ggridges geom_density_ridges
#' @importFrom DT datatable renderDataTable dataTableOutput
#' @importFrom readr read_delim
#' @importFrom magrittr %>%
#' @import shinyalert
#' @importFrom data.table fread
#' @importFrom shinyjqui orderInput
#' @importFrom shinyjs useShinyjs runjs
#' @importFrom shinyAce updateAceEditor aceEditor aceAutocomplete
#' @importFrom htmlwidgets JS
#' @import knitr
#' @import shinyBS
#' @import ComplexHeatmap
#' @importFrom xfun embed_files
#' @import kableExtra
#' @importFrom gridExtra grid.arrange
#' @importFrom directlabels geom_dl last.polygons
#' @importFrom zoo rollmean
#' @importFrom shinyWidgets updatePickerInput pickerInput pickerOptions
#' @importFrom ggiraph girafeOutput renderGirafe girafe geom_boxplot_interactive geom_point_interactive
#' @importFrom BioshinyModules ClusteringUI ClusteringServer
#' @importFrom textshape column_to_rownames
#' @importFrom DESeq2 vst
#' @import edgeR
#' @importFrom purrr imap_dfr reduce map_dbl
#' @import cicerone
#' 
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