R/TCGA_BRCA_CN_segments.R

In bioinformatic-seragnoli/BOBaFIT: Refitting diploid region profiles using a clustering procedure

#' Segments of 100 Breast Cancer samples, downloaded from TCGA-BRCA.
#'
#'
#' @format A data frame with79,607 rows and 12 variables:
#' \describe{
#'   \item{chr}{Chrosome which the segment belong}
#'   \item{start}{Starting point of the segment, in Mb}
#'   \item{end}{Ending point of the segment, in Mb}
#'   \item{width}{Width of the segment, in Mb}
#'   \item{strand}{Strand of the segment}
#'   \item{ID}{Sample name}
#'   \item{Num_Probes}{Probes involved}
#'   \item{Segment_Mean}{LogR of the segments}
#'   \item{Sample}{Barcode of tCGA-BRCA database}
#'   \item{arm}{Arm information, p o q}
#'   \item{chrarm}{Chromosomal arm which the segment belong}
#'   \item{CN}{Segments Copy Number value obtained by the logR }
#' }
#' @source \url{https://portal.gdc.cancer.gov/projects/TCGA-BRCA}
"TCGA_BRCA_CN_segments"