run_model: Run AlgalGame model

In bishun945/AlgalGame: A reaction-diffusion-taxis model of phytoplankton in the vertical profile

Description

Run AlgalGame model

Usage

run_model(
  inputs = NULL,
  Ttot = 2,
  dt = 0.001,
  L = 3,
  N = 60,
  ini = NULL,
  opt.abg = "Zhou2019",
  plot = TRUE,
  run.steady = FALSE,
  run.steady.list = list(time = 0),
  moving_avg = FALSE
)

Arguments

inputs	A list of parameters. Run show_parms to see all settings.
Ttot	Total of time
dt	Time interval
L	Column depth
N	Number of vertical grids
ini	Initial states of Biomass and Nutrient
opt.abg	option of abg, default as "Zhou2019"
plot	whether to plot the raster
out_steady	Whether to run steady resolver
out_steady.list	Input params of steady.1D

Value

An out object.

References

Klausmeier C A, Litchman E. Algal games: The vertical distribution of phytoplankton in poorly mixed water columns[J]. Limnology and Oceanography, 2001, 46(8): 1998-2007.

Examples

library(AlgalGame)
res <- run_model()
ggimage(res$out)

bishun945/AlgalGame documentation built on Aug. 29, 2021, 4:40 a.m.