API for bitmask/NEMpipeline
Pipeline to run various NEM and non-NEM methods on simulated and 2 experimental datasets

Global functions
attach_egenes Source code
binary Source code
bootstrap Source code
cluster_bin Source code
decompose Source code
filter_regulon Source code
geneset Source code
get_all_chipseq_data Source code
lfc Source code
make_data Source code
make_lfc Source code
normalize_counts Source code
nullmodel Source code
preprocess Source code
process_with_deseq Source code
process_with_edger Source code
progressive Source code
pvalue Source code
random Source code
reformat Source code
run_ER_pipeline Source code
run_nems Source code
run_simulated_pipeline Source code
set_fn_rate Source code
set_fp_rate Source code
sgene_heatmap Source code
step_010_lfc Source code
step_030_diffexp Source code
step_040_prepare_data Source code
step_042_simulate_data Source code
step_050_nems Source code
step_051_his Source code
step_052_correlation Source code
step_053_lm Source code
step_054_proportionality Source code
step_070_plot Source code
step_080_egenes Source code
step_090_chip Source code
trim_bootstrap Source code
tsne_plot Source code
walk_tree Source code
write_fly_data Source code
wt_h Source code
bitmask/NEMpipeline documentation built on Jan. 30, 2020, 12:42 p.m.