Files in bjreisman/cytotidyr
A Package for Creating Tidy Cytometry Data via the CytobankAPI
.Rbuildignore
.gitignore
CytExp_33997_Gates_v3.xml
DESCRIPTION
LICENSE
LICENSE.txt
NAMESPACE
R/apply_panel.R
R/apply_sampletags.R
R/apply_scales.R
R/asdataframe_flowFrame.R
R/asdataframe_flowSet.R
R/asinh_trans.R
R/asinh_trans_prettybreaks.R
R/cyotidyr_gui.R
R/fetchCytobankExperiment.R
R/fetch_scales.R
R/get_scales.R
R/inverseArcsinhTransform.R
R/inverseLogTransform.R
R/invertTransformerList.R
R/parseCytobankExperiment.R
R/parse_scales.R
README.md
README.rmd
cytotidyr.Rproj
debugging_gatingfxn.R
inst/extdata/CytExp_29564_Gates_v5.xml
inst/extdata/Donor 2 mem post-sort.fcs
inst/extdata/Donor 2 pre-sort.fcs
inst/extdata/exp_info_sample.rds
inst/extdata/experiment_29564_Mar-21-2019_05-37-AM.acs
inst/shiny-apps/cytotidyr_gui/R/loadfiles.R
inst/shiny-apps/cytotidyr_gui/R/mod_api.R
inst/shiny-apps/cytotidyr_gui/R/mod_exp_info_api.R
inst/shiny-apps/cytotidyr_gui/R/mod_experiment_table.R
inst/shiny-apps/cytotidyr_gui/R/mod_importbyfcsfile.R
inst/shiny-apps/cytotidyr_gui/R/mod_preprocessing.R
inst/shiny-apps/cytotidyr_gui/app.R
man/apply_panel.Rd
man/apply_sampletags.Rd
man/apply_scales.Rd
man/as.data.frame.flowFrame.Rd
man/as.data.frame.flowSet.Rd
man/as_tibble.flowSet.Rd
man/asinh_trans.Rd
man/asinh_trans_prettybreaks.Rd
man/cytotidyr_gui.Rd
man/fetchCytobankExperiment.Rd
man/fetch_scales.Rd
man/get_scales.Rd
man/inverseArcsinhTransform.Rd
man/inverseLogTransform.Rd
man/invertTransformerList.Rd
man/parseCytobankExperiment.Rd
man/parse_scales.Rd
vignettes/figures/cytotidyrlogo.png
vignettes/figures/cytotidyrlogo2.png
vignettes/figures/unnamed-chunk-12-1.pdf
vignettes/figures/unnamed-chunk-12-1.png
vignettes/intro-to-cytotidyr.Rmd
vignettes/intro-to-cytotidyr.html
vignettes/intro-to-cytotidyr_cache/html/__packages
vignettes/intro-to-cytotidyr_cache/html/unnamed-chunk-10_2d88728d02f0382c681b59a67137fce3.RData
vignettes/intro-to-cytotidyr_cache/html/unnamed-chunk-10_2d88728d02f0382c681b59a67137fce3.rdb
vignettes/intro-to-cytotidyr_cache/html/unnamed-chunk-10_2d88728d02f0382c681b59a67137fce3.rdx
vignettes/intro-to-cytotidyr_cache/html/unnamed-chunk-10_e8d1142d1b4b42f54caf80b9b157e58e.RData
vignettes/intro-to-cytotidyr_cache/html/unnamed-chunk-10_e8d1142d1b4b42f54caf80b9b157e58e.rdb
vignettes/intro-to-cytotidyr_cache/html/unnamed-chunk-10_e8d1142d1b4b42f54caf80b9b157e58e.rdx
vignettes/intro-to-cytotidyr_cache/html/unnamed-chunk-11_08242191058e4d74dfbd5910348b9269.RData
vignettes/intro-to-cytotidyr_cache/html/unnamed-chunk-11_08242191058e4d74dfbd5910348b9269.rdb
vignettes/intro-to-cytotidyr_cache/html/unnamed-chunk-11_08242191058e4d74dfbd5910348b9269.rdx
vignettes/intro-to-cytotidyr_cache/html/unnamed-chunk-11_8bc5473631b86eb84c21c00b9fcaccc7.RData
vignettes/intro-to-cytotidyr_cache/html/unnamed-chunk-11_8bc5473631b86eb84c21c00b9fcaccc7.rdb
vignettes/intro-to-cytotidyr_cache/html/unnamed-chunk-11_8bc5473631b86eb84c21c00b9fcaccc7.rdx
vignettes/intro-to-cytotidyr_cache/html/unnamed-chunk-12_89c9a5e81394082dd0958b5cb7cfa053.RData
vignettes/intro-to-cytotidyr_cache/html/unnamed-chunk-12_89c9a5e81394082dd0958b5cb7cfa053.rdb
vignettes/intro-to-cytotidyr_cache/html/unnamed-chunk-12_89c9a5e81394082dd0958b5cb7cfa053.rdx
vignettes/intro-to-cytotidyr_cache/html/unnamed-chunk-12_c98eca2b0246b7f2ef151ab393617a3f.RData
vignettes/intro-to-cytotidyr_cache/html/unnamed-chunk-12_c98eca2b0246b7f2ef151ab393617a3f.rdb
vignettes/intro-to-cytotidyr_cache/html/unnamed-chunk-12_c98eca2b0246b7f2ef151ab393617a3f.rdx
vignettes/intro-to-cytotidyr_cache/html/unnamed-chunk-1_33368db07e92275e400f38e4d18c3260.RData
vignettes/intro-to-cytotidyr_cache/html/unnamed-chunk-1_33368db07e92275e400f38e4d18c3260.rdb
vignettes/intro-to-cytotidyr_cache/html/unnamed-chunk-1_33368db07e92275e400f38e4d18c3260.rdx
vignettes/intro-to-cytotidyr_cache/html/unnamed-chunk-1_3f7ec1f9e649ee6c8b411b4c1c53e7ba.RData
vignettes/intro-to-cytotidyr_cache/html/unnamed-chunk-1_3f7ec1f9e649ee6c8b411b4c1c53e7ba.rdb
vignettes/intro-to-cytotidyr_cache/html/unnamed-chunk-1_3f7ec1f9e649ee6c8b411b4c1c53e7ba.rdx
vignettes/intro-to-cytotidyr_cache/html/unnamed-chunk-2_73e6893695dce736e4f8a160b14e5583.RData
vignettes/intro-to-cytotidyr_cache/html/unnamed-chunk-2_73e6893695dce736e4f8a160b14e5583.rdb
vignettes/intro-to-cytotidyr_cache/html/unnamed-chunk-2_73e6893695dce736e4f8a160b14e5583.rdx
vignettes/intro-to-cytotidyr_cache/html/unnamed-chunk-2_b6d73cd69566fce950a930fc02efb9c5.rdx
vignettes/intro-to-cytotidyr_cache/html/unnamed-chunk-2_d17040f4324bd820683aeb8765bc38b0.RData
vignettes/intro-to-cytotidyr_cache/html/unnamed-chunk-2_d17040f4324bd820683aeb8765bc38b0.rdb
vignettes/intro-to-cytotidyr_cache/html/unnamed-chunk-2_d17040f4324bd820683aeb8765bc38b0.rdx
vignettes/intro-to-cytotidyr_cache/html/unnamed-chunk-3_3f0a1bb121be1850c3ee5c6fe57ccc65.RData
vignettes/intro-to-cytotidyr_cache/html/unnamed-chunk-3_3f0a1bb121be1850c3ee5c6fe57ccc65.rdb
vignettes/intro-to-cytotidyr_cache/html/unnamed-chunk-3_3f0a1bb121be1850c3ee5c6fe57ccc65.rdx
vignettes/intro-to-cytotidyr_cache/html/unnamed-chunk-3_95930618cbd59d45459106c6a34fc67c.RData
vignettes/intro-to-cytotidyr_cache/html/unnamed-chunk-3_95930618cbd59d45459106c6a34fc67c.rdb
vignettes/intro-to-cytotidyr_cache/html/unnamed-chunk-3_95930618cbd59d45459106c6a34fc67c.rdx
vignettes/intro-to-cytotidyr_cache/html/unnamed-chunk-4_618697d3021880850d659fa6dd394213.RData
vignettes/intro-to-cytotidyr_cache/html/unnamed-chunk-4_618697d3021880850d659fa6dd394213.rdb
vignettes/intro-to-cytotidyr_cache/html/unnamed-chunk-4_618697d3021880850d659fa6dd394213.rdx
vignettes/intro-to-cytotidyr_cache/html/unnamed-chunk-4_afbfff725392466a4c7317b467ce2dfa.RData
vignettes/intro-to-cytotidyr_cache/html/unnamed-chunk-4_afbfff725392466a4c7317b467ce2dfa.rdb
vignettes/intro-to-cytotidyr_cache/html/unnamed-chunk-4_afbfff725392466a4c7317b467ce2dfa.rdx
vignettes/intro-to-cytotidyr_cache/html/unnamed-chunk-5_3094119bc5210e77b527c5f770052395.RData
vignettes/intro-to-cytotidyr_cache/html/unnamed-chunk-5_3094119bc5210e77b527c5f770052395.rdb
vignettes/intro-to-cytotidyr_cache/html/unnamed-chunk-5_3094119bc5210e77b527c5f770052395.rdx
vignettes/intro-to-cytotidyr_cache/html/unnamed-chunk-5_fbc1ea940664f3d04090c1c9a2fd1c98.RData
vignettes/intro-to-cytotidyr_cache/html/unnamed-chunk-5_fbc1ea940664f3d04090c1c9a2fd1c98.rdb
vignettes/intro-to-cytotidyr_cache/html/unnamed-chunk-5_fbc1ea940664f3d04090c1c9a2fd1c98.rdx
vignettes/intro-to-cytotidyr_cache/html/unnamed-chunk-6_0e33bfcf3c5370decc89696786645d73.RData
vignettes/intro-to-cytotidyr_cache/html/unnamed-chunk-6_0e33bfcf3c5370decc89696786645d73.rdb
vignettes/intro-to-cytotidyr_cache/html/unnamed-chunk-6_0e33bfcf3c5370decc89696786645d73.rdx
vignettes/intro-to-cytotidyr_cache/html/unnamed-chunk-6_b894938c7858b6e7b41aee32436daae2.RData
vignettes/intro-to-cytotidyr_cache/html/unnamed-chunk-6_b894938c7858b6e7b41aee32436daae2.rdb
vignettes/intro-to-cytotidyr_cache/html/unnamed-chunk-6_b894938c7858b6e7b41aee32436daae2.rdx
vignettes/intro-to-cytotidyr_cache/html/unnamed-chunk-7_6278a65e30a08844c92e6bc9f06d2c05.RData
vignettes/intro-to-cytotidyr_cache/html/unnamed-chunk-7_6278a65e30a08844c92e6bc9f06d2c05.rdb
vignettes/intro-to-cytotidyr_cache/html/unnamed-chunk-7_6278a65e30a08844c92e6bc9f06d2c05.rdx
vignettes/intro-to-cytotidyr_cache/html/unnamed-chunk-7_97e2f458b04158b91a4f1d8bc6af80d6.RData
vignettes/intro-to-cytotidyr_cache/html/unnamed-chunk-7_97e2f458b04158b91a4f1d8bc6af80d6.rdb
vignettes/intro-to-cytotidyr_cache/html/unnamed-chunk-7_97e2f458b04158b91a4f1d8bc6af80d6.rdx
vignettes/intro-to-cytotidyr_cache/html/unnamed-chunk-8_5e9f70338d3970ad9f41537da17a62a6.RData
vignettes/intro-to-cytotidyr_cache/html/unnamed-chunk-8_5e9f70338d3970ad9f41537da17a62a6.rdb
vignettes/intro-to-cytotidyr_cache/html/unnamed-chunk-8_5e9f70338d3970ad9f41537da17a62a6.rdx
vignettes/intro-to-cytotidyr_cache/html/unnamed-chunk-8_659d5fd90b250615b0bfc3d656e17ea4.RData
vignettes/intro-to-cytotidyr_cache/html/unnamed-chunk-8_659d5fd90b250615b0bfc3d656e17ea4.rdb
vignettes/intro-to-cytotidyr_cache/html/unnamed-chunk-8_659d5fd90b250615b0bfc3d656e17ea4.rdx
vignettes/intro-to-cytotidyr_cache/html/unnamed-chunk-9_4ff38ac8771c0dd4257f1241f4272e7e.RData
vignettes/intro-to-cytotidyr_cache/html/unnamed-chunk-9_4ff38ac8771c0dd4257f1241f4272e7e.rdb
vignettes/intro-to-cytotidyr_cache/html/unnamed-chunk-9_4ff38ac8771c0dd4257f1241f4272e7e.rdx
vignettes/intro-to-cytotidyr_cache/html/unnamed-chunk-9_8b3bf29cbdcde1689cba6db46e2fecd7.RData
vignettes/intro-to-cytotidyr_cache/html/unnamed-chunk-9_8b3bf29cbdcde1689cba6db46e2fecd7.rdb
vignettes/intro-to-cytotidyr_cache/html/unnamed-chunk-9_8b3bf29cbdcde1689cba6db46e2fecd7.rdx
vignettes/intro-to-cytotidyr_cache/html/unzip and read_ec8f1741bb4da1a5e391243b7b34c6e1.RData
vignettes/intro-to-cytotidyr_cache/html/unzip and read_ec8f1741bb4da1a5e391243b7b34c6e1.rdb
vignettes/intro-to-cytotidyr_cache/html/unzip and read_ec8f1741bb4da1a5e391243b7b34c6e1.rdx
vignettes/intro-to-cytotidyr_cache/html/unzip and read_f91d68511c05c757cb00cfd05ad5d11b.RData
vignettes/intro-to-cytotidyr_cache/html/unzip and read_f91d68511c05c757cb00cfd05ad5d11b.rdb
vignettes/intro-to-cytotidyr_cache/html/unzip and read_f91d68511c05c757cb00cfd05ad5d11b.rdx
vignettes/intro-to-cytotidyr_cache/latex/__packages
vignettes/intro-to-cytotidyr_cache/latex/unnamed-chunk-10_fc4e499a5282508bf8a0e3b83798739f.RData
vignettes/intro-to-cytotidyr_cache/latex/unnamed-chunk-10_fc4e499a5282508bf8a0e3b83798739f.rdb
vignettes/intro-to-cytotidyr_cache/latex/unnamed-chunk-10_fc4e499a5282508bf8a0e3b83798739f.rdx
vignettes/intro-to-cytotidyr_cache/latex/unnamed-chunk-11_230102cc4208012ce46d42b2f5be2de1.RData
vignettes/intro-to-cytotidyr_cache/latex/unnamed-chunk-11_230102cc4208012ce46d42b2f5be2de1.rdb
vignettes/intro-to-cytotidyr_cache/latex/unnamed-chunk-11_230102cc4208012ce46d42b2f5be2de1.rdx
vignettes/intro-to-cytotidyr_cache/latex/unnamed-chunk-12_997c9a9efc62652922f79cd5b5344cd9.RData
vignettes/intro-to-cytotidyr_cache/latex/unnamed-chunk-12_997c9a9efc62652922f79cd5b5344cd9.rdb
vignettes/intro-to-cytotidyr_cache/latex/unnamed-chunk-12_997c9a9efc62652922f79cd5b5344cd9.rdx
vignettes/intro-to-cytotidyr_cache/latex/unnamed-chunk-1_563ed0ab5c0069d86728e40c37b4e802.RData
vignettes/intro-to-cytotidyr_cache/latex/unnamed-chunk-1_563ed0ab5c0069d86728e40c37b4e802.rdb
vignettes/intro-to-cytotidyr_cache/latex/unnamed-chunk-1_563ed0ab5c0069d86728e40c37b4e802.rdx
vignettes/intro-to-cytotidyr_cache/latex/unnamed-chunk-2_b55b28e3a31f3d4af7824b5f170e4b4d.RData
vignettes/intro-to-cytotidyr_cache/latex/unnamed-chunk-2_b55b28e3a31f3d4af7824b5f170e4b4d.rdb
vignettes/intro-to-cytotidyr_cache/latex/unnamed-chunk-2_b55b28e3a31f3d4af7824b5f170e4b4d.rdx
vignettes/intro-to-cytotidyr_cache/latex/unnamed-chunk-3_81f5584728ee7eac6a37ccdff2285090.RData
vignettes/intro-to-cytotidyr_cache/latex/unnamed-chunk-3_81f5584728ee7eac6a37ccdff2285090.rdb
vignettes/intro-to-cytotidyr_cache/latex/unnamed-chunk-3_81f5584728ee7eac6a37ccdff2285090.rdx
vignettes/intro-to-cytotidyr_cache/latex/unnamed-chunk-4_2ff8afa730b6e4f1cde86b83d940fb0f.RData
vignettes/intro-to-cytotidyr_cache/latex/unnamed-chunk-4_2ff8afa730b6e4f1cde86b83d940fb0f.rdb
vignettes/intro-to-cytotidyr_cache/latex/unnamed-chunk-4_2ff8afa730b6e4f1cde86b83d940fb0f.rdx
vignettes/intro-to-cytotidyr_cache/latex/unnamed-chunk-5_c5affe454c953b0ab9377faeb55823b1.RData
vignettes/intro-to-cytotidyr_cache/latex/unnamed-chunk-5_c5affe454c953b0ab9377faeb55823b1.rdb
vignettes/intro-to-cytotidyr_cache/latex/unnamed-chunk-5_c5affe454c953b0ab9377faeb55823b1.rdx
vignettes/intro-to-cytotidyr_cache/latex/unnamed-chunk-6_2a0c5c24969a778e1ec11a4487650028.RData
vignettes/intro-to-cytotidyr_cache/latex/unnamed-chunk-6_2a0c5c24969a778e1ec11a4487650028.rdb
vignettes/intro-to-cytotidyr_cache/latex/unnamed-chunk-6_2a0c5c24969a778e1ec11a4487650028.rdx
vignettes/intro-to-cytotidyr_cache/latex/unnamed-chunk-7_675bab20d78f103c4caca19162f51e08.RData
vignettes/intro-to-cytotidyr_cache/latex/unnamed-chunk-7_675bab20d78f103c4caca19162f51e08.rdb
vignettes/intro-to-cytotidyr_cache/latex/unnamed-chunk-7_675bab20d78f103c4caca19162f51e08.rdx
vignettes/intro-to-cytotidyr_cache/latex/unnamed-chunk-8_c8f076a2e669043756582478796a88c6.RData
vignettes/intro-to-cytotidyr_cache/latex/unnamed-chunk-8_c8f076a2e669043756582478796a88c6.rdb
vignettes/intro-to-cytotidyr_cache/latex/unnamed-chunk-8_c8f076a2e669043756582478796a88c6.rdx
vignettes/intro-to-cytotidyr_cache/latex/unnamed-chunk-9_23571f3685c3a47b82b2c608995a7caa.RData
vignettes/intro-to-cytotidyr_cache/latex/unnamed-chunk-9_23571f3685c3a47b82b2c608995a7caa.rdb
vignettes/intro-to-cytotidyr_cache/latex/unnamed-chunk-9_23571f3685c3a47b82b2c608995a7caa.rdx
vignettes/intro-to-cytotidyr_cache/latex/unzip and read_caab5fe03cf49721844c0d791773e148.RData
vignettes/intro-to-cytotidyr_cache/latex/unzip and read_caab5fe03cf49721844c0d791773e148.rdb
vignettes/intro-to-cytotidyr_cache/latex/unzip and read_caab5fe03cf49721844c0d791773e148.rdx
vignettes/minimal_workflow.rmd
