parseCytobankExperiment: Parses ACS files exported from Cytobank for use in...

In bjreisman/cytotidyr: A Package for Creating Tidy Cytometry Data via the CytobankAPI

Description

Parses ACS files exported from Cytobank for use in flowWorkspace

Usage

parseCytobankExperiment(acspath)

Arguments

acspath

A path to the exported ACS file

Value

A list of experiment information including

1. A tibble of FCS files contained in the experiment and their panels

2. A tibble of sample tags from the experiment

3. A table of scales exported directly from cytobank

4. A transformerList version of the scales for use in flowWorkspace

5. A list of compensation matricies

6. A gating + population heirarchy imported from Cytobank by CytoML

7. A list of panels contained in the experiment

8. The experiment ID (character vector)

9. The experiment name (character vector)

10. A list of files unpacked from the ACS file, including FCS files

bjreisman/cytotidyr documentation built on Nov. 22, 2020, 9:30 p.m.