Files in bjstewart1/GenotypeMixtures
Get donors from a set of souporcell outputs and an experimental design
.Rbuildignore
.github/.gitignore
.github/workflows/build.yaml
.github/workflows/pkgdown.yaml
.gitignore
DESCRIPTION
GenotypeMixtures.Rproj
NAMESPACE
R/gt_mix_functions.R
R/utilities.R
README.md
inst/extdata/experimental_design.csv
inst/extdata/mixtures_1/cluster_genotypes.vcf
inst/extdata/mixtures_1/clusters.tsv
inst/extdata/mixtures_2/cluster_genotypes.vcf
inst/extdata/mixtures_2/clusters.tsv
inst/extdata/mixtures_3/cluster_genotypes.vcf
inst/extdata/mixtures_3/clusters.tsv
inst/extdata/mixtures_4/cluster_genotypes.vcf
inst/extdata/mixtures_4/clusters.tsv
inst/extdata/mixtures_5/cluster_genotypes.vcf
inst/extdata/mixtures_5/clusters.tsv
man/cells_to_genotypes.Rd
man/check_complete_graph.Rd
man/cluster_color_ramp.Rd
man/construct_genotype_cluster_graph.Rd
man/construct_genotype_cluster_graph_unsupervised.Rd
man/get_shared.Rd
man/make_overlapping_mixture.Rd
man/membership_map.Rd
man/plot_cross_vaf.Rd
man/plot_experimental_design.Rd
man/read_SOC_locations.Rd
man/read_experimental_design.Rd
man/shared_genotypes.Rd
man/shared_genotypes_relatedness.Rd
vignettes/.gitignore
vignettes/introduction.Rmd
