shared_genotypes: shared_genotypes

In bjstewart1/GenotypeMixtures: Get donors from a set of souporcell outputs and an experimental design

shared_genotypes

Description

Function that compares genotype calls across two experiments

Usage

shared_genotypes(
  vcf1,
  vcf2,
  shared,
  experiment_1_name,
  experiment_2_name,
  ncounts = 10
)

Arguments

vcf1	the first vcf
vcf2	the second vcf
shared	numeric- the number of shared genotypes between the experiments
experiment_1_name	the name of experiment 1
experiment_2_name	the name of experiment 2
ncounts	numeric - the number of counts supporting each variant

Value

a data frame of the shared genotype clusters between the two experiments

Examples

#' shared_genotypes()

bjstewart1/GenotypeMixtures documentation built on Aug. 27, 2022, 2:01 p.m.