correlation_edgelist: Correlation edgelist

In blasern/cornet:

Description

Calculate the edgelist of a correlation network

Usage

correlation_edgelist(data, correlation_method = c("pearson", "kendall",
  "spearman"), use = c("everything", "all.obs", "complete.obs",
  "na.or.complete", "pairwise.complete.obs"), threshold = 0.05,
  threshold_method = c("pvalue", "absolute"),
  adjust = stats::p.adjust.methods)

Arguments

data	input data, a numeric matrix or data frame.
correlation_method	a character string indicating which correlatin coefficient to compute. One of '"pearson"' (default), '"kendall"', or '"spearman"'.
use	a character string indicating how to deal with missing values. One of '"everything"', '"all.obs"', '"complete.obs"', '"na.or.complete"', or '"pairwise.complete.obs"'.
threshold	a numeric threshold
threshold_method	a character string indicating how correlations should be thresholded. One of '"pvalue"' (default), or '"absolute"'.
adjust	a character string indicating how p-values should be adjusted for multiple comparisons. See p.adjust.methods for all methods.

Examples

data('mtcars')
correlation_edgelist(mtcars)

blasern/cornet documentation built on May 19, 2019, 9:37 p.m.