readDataForPI: A function for reading data in for use with the...

Description Usage Arguments Examples

Description

This function allows the user to read in variance stabalized RNA-seq data and gene model names for subsequent proliferative index calculation and analysis

Usage

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readDataForPI(vstData, modelIDs)

Arguments

vstData

Dataframe of user variance stabalized count data (from DESeq2) with samples in columns and genes in rows. Rownames must be genes.

modelIDs

Genes in user identified model for comparison to proliferative index

Examples

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readDataForPI(vstTCGA_ACCData_sub, c("AIFM3", "ATP9B", "CTRC", "MCL1", 
"MGAT4B", "ODF2L", "SNORA65", "TPPP2"))

blasseigne/ProliferativeIndex documentation built on May 12, 2019, 9:30 p.m.