Description Usage Arguments Examples
This function allows the user to read in variance stabalized RNA-seq data and gene model names for subsequent proliferative index calculation and analysis
1 | readDataForPI(vstData, modelIDs)
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vstData |
Dataframe of user variance stabalized count data (from DESeq2) with samples in columns and genes in rows. Rownames must be genes. |
modelIDs |
Genes in user identified model for comparison to proliferative index |
1 2 | readDataForPI(vstTCGA_ACCData_sub, c("AIFM3", "ATP9B", "CTRC", "MCL1",
"MGAT4B", "ODF2L", "SNORA65", "TPPP2"))
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