mpiWrapper: Runs Sparrow Regression

In blogsdon/metanetwork: Network meta analysis

Runs Sparrow Regression

Description

This function Sparrow Regression wrapped with the Rmpi::mpi parralel implementation. User specifies between sparrowZ, sparrow2Z, or sparrow2ZFDR implementation.

Usage

mpiWrapper(
  data,
  nodes,
  pathv,
  regressionFunction,
  outputpath,
  eigen = NULL,
  regulatorIndex = NULL,
  hosts = NULL
)

Arguments

data	Required. Expression matrix to be used for network construction.
nodes	Required. The number of nodes to run the process over.
pathv	Required.
regressionFunction	Required. Character vector specifying the specific sparrow regression function to deploy. Options are one of c("sparrowZ", "sparrow2Z", "sparrow2ZFDR")
outputpath	Required. The output path to save the resulting coexpression network
eigen	Optional. (Default = NULL)
regulatorIndex	Optional. (Default = NULL)
hosts	Optional. (Default = NULL)

Value

NULL. Saves a sparrow network object to paste0('outputpath', ‘regressionFunction',’Network.csv')

blogsdon/metanetwork documentation built on April 27, 2022, 3:53 p.m.