mrnetWrapper | R Documentation |
This function infers the interaction network of 'data' using the MRNET algorithm.
mrnetWrapper( data, temp_path, path = NULL, pval = 1, outputpath, tool_storage_loc )
data |
Required. A gene expression matrix with rows as sample IDs and columns as Gene or feature IDs. |
temp_path |
Required. The path location to install aracne to. eg. 'config$input_profile$temp_storage_loc' |
path |
Optional. String containing the path to the aracne compiled executable. (Default = NULL) |
pval |
Optional. Cutoff p-value to determine a coexpressed edge. If one is specified aracne will produce the file 'aracneNetwork.csv' if less than 1 it will produce the file 'aracneThresholdNetwork.csv'. (Default = 1) |
outputpath |
Required. The output path to save the resulting coexpression network |
tool_storage_loc |
Required. Provides the directory inside docker to temporarily store the ARACNE files and package. (Default = config$input_profile$temp_storage_loc) |
NULL. Saves a sparrow network object to paste0('outputpath', ‘regressionFunction',’mrnetNetwork.csv')
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.