View source: R/wgcnaSoftThreshold.R
wgcnaSoftThreshold | R Documentation |
Runs WGCNA::pickSoftThreshold over a gene expression matrix.
wgcnaSoftThreshold( data, path = NULL, pval = 1, outputpath, RsquaredCut = 0.8, defaultNaPower = 6 )
data |
Required. Gene expression data in a matrix or data frame. Rows correspond to samples and columns to genes. |
path |
Optional. Not utilized in this function. (Default = NULL) |
pval |
Optional. Not utilized in this function. (Default = 1) |
outputpath |
Required. The file path to write the resulting coexpression network. |
RsquaredCut |
Optional. Desired minimum scale free topology fitting index R^2. (Default = 0.80) |
defaultNaPower |
Optional. The power to rais the abs(cor(data)) matrix to if thee power estimate from WGCNA::pickSoftThreshold() is too low (Default = 6). |
NULL. Writes coexpression network named wgcnaSoftThresholdNetwork.csv to 'outputpath'
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.