simulateSNPindex: Simulates a delta SNP-index with replication
In bmansfeld/QTLseqR: QTL mapping using Bulk Segregant Analysis of Next Generation Sequencing data.
Description
Usage
Arguments
Value
Description
Simulates a delta SNP-index with replication
Usage
1
2
simulateSNPindex(depth, altFreq1, altFreq2, replicates = 10000,
filter = NULL)
Arguments
depth
integer. A read depth for which to replicate SNP-index calls.
altFreq1
numeric. The alternate allele frequency for bulk A.
altFreq2
numeric. The alternate allele frequency for bulk B.
replicates
integer. The number of bootstrap replications.
filter
numeric. an optional minimum SNP-index filter
Value
Returns a vector of length replicates delta SNP-indeces
bmansfeld/QTLseqR documentation built on Jan. 25, 2020, 8:52 p.m.
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Description Usage Arguments Value
Description
Simulates a delta SNP-index with replication
Usage
1 2 | simulateSNPindex(depth, altFreq1, altFreq2, replicates = 10000,
filter = NULL)
|
Arguments
depth |
integer. A read depth for which to replicate SNP-index calls. |
altFreq1 |
numeric. The alternate allele frequency for bulk A. |
altFreq2 |
numeric. The alternate allele frequency for bulk B. |
replicates |
integer. The number of bootstrap replications. |
filter |
numeric. an optional minimum SNP-index filter |
Value
Returns a vector of length replicates delta SNP-indeces
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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