An R library for creating Next-Generation Clustered Heat Maps (NG-CHM)
A docker image containing RStudio with this library preinstalled is available. Follow the instructions for using rstudio, but substitute "bmbroom/rstudio-ngchm" for the name of the repository.
To install this package into your own R system:
> install.packages("devtools") > devtools::install_github("bmbroom/tsvio") > devtools::install_github("bmbroom/NGCHMR", ref="stable")
You might also choose to install the beta version of the library, or for the really daring the master branch.
The installed library will be called NGCHM:
> library (NGCHM)
You will also need to create a configuration file describing, among other things, the NG-CHM server(s) to which you have access.
A basic guide to creating NG-CHMs using the library is available at http://bioinformatics.mdanderson.org/main/NG-CHM:NGCHMR-Using .
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