Files in bmbroom/NGCHMR
Utilities for Creating Next Generation Clustered Heat Maps

.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
R/allClasses.R R/allGenerics.R R/allMethods.R R/dendrogram-fixes.R R/functions.R R/ngchmshaidy.R R/package.R R/shaidy.R R/zzz.R README.md
data/TCGA.GBM.EXPR.rda
inst/NGCHMManager/api/config.txt
inst/NGCHMManager/config.txt
inst/NGCHMManager/rproxy.conf
inst/SimpleChmLoader/README
inst/SimpleChmLoader/README.SCL.txt
inst/SimpleChmLoader/example-config.txt
inst/SimpleChmLoader/scl-driver.sh
inst/SimpleChmLoader/scl-make-deploy-dir.sh
inst/SimpleChmLoader/scl-next-action.sh
inst/SimpleChmLoader/scl-update-chm-list.sh
inst/base.config/conf.d/01-server-protocol-manager.R inst/base.config/conf.d/01-server-protocol-manual.R inst/base.config/conf.d/01-server-protocol-scl.R inst/base.config/conf.d/01-server-protocol-shaidyDir.R
inst/extdata/custom.js
inst/index.R
man/NGCHM-functions.Rd man/NGCHM-initialization.Rd man/NGCHM-package.Rd man/TCGA.GBM.EXPR.Rd man/cash-.shaidyRepo.Rd man/chmAdd-method.Rd man/chmAddAxisType-method.Rd man/chmAddCSS-method.Rd man/chmAddColormap-method.Rd man/chmAddCovariate-method.Rd man/chmAddCovariateBar-method.Rd man/chmAddDataset-method.Rd man/chmAddDialog-method.Rd man/chmAddLayer-method.Rd man/chmAddMenuItem-method.Rd man/chmAddMetaData-method.Rd man/chmAddOverview-method.Rd man/chmAddProperty-method.Rd man/chmAddRelated-method.Rd man/chmAddRelatedGroup-method.Rd man/chmAddSpecificAxisTypeFunction-method.Rd man/chmAddTag-method.Rd man/chmAddTemplate-method.Rd man/chmAddToolboxR-method.Rd man/chmAddToolboxR2-method.Rd man/chmAddToolboxRC-method.Rd man/chmAxis.Rd man/chmAxisType.Rd man/chmBindFunction-method.Rd man/chmBrowse.Rd man/chmColOrder-method.Rd man/chmCreateCollection.Rd man/chmCreateManagedServer.Rd man/chmCreateServer.Rd man/chmCurrentCollection.Rd man/chmCurrentServer.Rd man/chmDefaultColOrder.Rd man/chmDefaultRowOrder.Rd man/chmDeployServer-method.Rd man/chmExportToFile-method.Rd man/chmExportToPDF-method.Rd man/chmFieldAccessFunction.Rd man/chmGetDataset-method.Rd man/chmGetDeployServerConfig.Rd man/chmGetFunction.Rd man/chmGetOverview.Rd man/chmGetProperty-method.Rd man/chmGetTypeInfo.Rd man/chmGetURL-method.Rd man/chmHasProperty-method.Rd man/chmInstall-method.Rd man/chmListFunctions.Rd man/chmListServers.Rd man/chmListTypes.Rd man/chmLoadCHM-method.Rd man/chmMake-method.Rd man/chmMakePrivate-method.Rd man/chmMakePublic-method.Rd man/chmManager.Rd man/chmName-method.Rd man/chmNew.Rd man/chmNewColorMap.Rd man/chmNewCovariate.Rd man/chmNewCovariateBar.Rd man/chmNewDataLayer.Rd man/chmNewDataset.Rd man/chmNewDialog.Rd man/chmNewFunction.Rd man/chmNewProperty.Rd man/chmNewServer.Rd man/chmOriginalColOrder.Rd man/chmOriginalRowOrder.Rd man/chmProperties.Rd man/chmRandomColOrder.Rd man/chmRandomRowOrder.Rd man/chmRegisterAxisFunction.Rd man/chmRegisterFunction.Rd man/chmRegisterGetMetadataFunction.Rd man/chmRegisterMatrixFunction.Rd man/chmRegisterToolboxFunction.Rd man/chmRegisterType.Rd man/chmRegisterTypeMapper.Rd man/chmRegisterTypeSplitter.Rd man/chmRowOrder-method.Rd man/chmServer.Rd man/chmSetCollection.Rd man/chmSetCredentials-method.Rd man/chmSetDeployServerConfig.Rd man/chmStringopFunction.Rd man/chmUninstall-method.Rd man/chmUrlBase-method.Rd man/chmUserDendrogramToShaid.Rd man/chmUserLabelsToShaid.Rd man/chmWriteCustomJS.Rd man/cos.dist1.Rd man/gitHashObject.Rd man/ngchm-class.Rd man/ngchmAddDatasetBlob.Rd man/ngchmAddMatrixToCollection.Rd man/ngchmAddObjectToCollection.Rd man/ngchmAxis-class.Rd man/ngchmAxisFunction-class.Rd man/ngchmAxisType-class.Rd man/ngchmBar-class.Rd man/ngchmCSS-class.Rd man/ngchmCollectionInCollection.Rd man/ngchmCollectionTree.Rd man/ngchmColormap-class.Rd man/ngchmColorpt-class.Rd man/ngchmCovariate-class.Rd man/ngchmCreateServerProtocol.Rd man/ngchmDataset-class.Rd man/ngchmDialog-class.Rd man/ngchmFindRepo.Rd man/ngchmGetDataFileShaid.Rd man/ngchmGetEnv.Rd man/ngchmGetHandleHTTR.Rd man/ngchmGetLabels.Rd man/ngchmGetLabelsStr.Rd man/ngchmGetProtoParam.Rd man/ngchmGetServerProtocol.Rd man/ngchmInitShaidyRepository.Rd man/ngchmJS-class.Rd man/ngchmLayer-class.Rd man/ngchmListServerProtocols.Rd man/ngchmLoadDatasetBlob.Rd man/ngchmMakeFormat.original.Rd man/ngchmMakeFormat.shaidy.Rd man/ngchmMatrixFunction-class.Rd man/ngchmMenuItem-class.Rd man/ngchmMetaData-class.Rd man/ngchmNewBar.Rd man/ngchmNewCollection.Rd man/ngchmOverview-class.Rd man/ngchmProperty-class.Rd man/ngchmProtoParamCheck.Rd man/ngchmPushSourceRepository.Rd man/ngchmPushTempRepository.Rd man/ngchmRegisterServer.Rd man/ngchmRelated-class.Rd man/ngchmRelatedGroup-class.Rd man/ngchmRenderChm.Rd man/ngchmResponseJSON.Rd man/ngchmRowCenter.Rd man/ngchmSaveAsDatasetBlob.Rd man/ngchmSaveAsDendrogramBlob.Rd man/ngchmSaveChmAsBlob.Rd man/ngchmServer-class.Rd man/ngchmServerProtocol-class.Rd man/ngchmShaidyInit.Rd man/ngchmTemplate-class.Rd man/ngchmTileDataset.Rd man/ngchmTypeMapper-class.Rd man/ngchmUnregisterServer.Rd man/ngchmValueProp-class.Rd man/optDendrogram-class.Rd man/plot.ngchmVersion2.Rd man/print.ngchm.type.info.Rd man/print.shaidyRepo.Rd man/readTile.Rd man/shaid-class.Rd man/shaidyAddFileBlob.Rd man/shaidyBlobExists.Rd man/shaidyCopyBlob.Rd man/shaidyCreateProtoBlob.Rd man/shaidyFinalizeProtoBlob.Rd man/shaidyFindRepo.Rd man/shaidyGetComponents-method.Rd man/shaidyGetShaid-method.Rd man/shaidyHashProtoBlob.Rd man/shaidyInit.Rd man/shaidyInitRepository.Rd man/shaidyLoadProvenanceDB.Rd man/shaidyLoadProvidDB.Rd man/shaidyLoadRepository.Rd man/shaidyNewCache.Rd man/shaidyProvenance.Rd man/shaidyRegisterRepoAPI.Rd man/shaidyRepoAPI.Rd man/validateNewLayer.Rd man/writeTile.Rd tests/testthat.R tests/testthat/test-gitSha.R
bmbroom/NGCHMR documentation built on Aug. 8, 2017, 5:17 p.m.