ngchmMakeFormat.original: Make an original format NGCHM.

In bmbroom/NGCHMR: Utilities for Creating Next Generation Clustered Heat Maps

Make an original format NGCHM.

Description

Make an original format NGCHM.

Usage

ngchmMakeFormat.original(
  chm,
  server,
  deleteOld = TRUE,
  useJAR = NULL,
  javaTraceLevel = NULL,
  javaOptions = NULL,
  buildArchive = NULL
)

Arguments

chm	The original format CHM to compile.
server	The server for which to compile the NGCHM. Default getOption("NGCHM.Server",chmListServers()1). Required iff useJar is not defined.
deleteOld	If TRUE, delete any old CHM of this name before beginning build. (Default is TRUE.)
useJAR	If defined, the location (filename) of the chmbuilder jar file. The package will not download a current jar file from the server. It is the caller's responsibility to ensure the builder jar file is compatible with the server on which the NGCHM will be installed. (Default is not defined.)
javaTraceLevel	Trace level option passed to the Java process. Default is getOption("NGCHM.Java.Trace','PROGRESS').
javaOptions	Additional options to pass to the Java process. Default is getOption('NGCHM.Java.Options','-Xmx2G').
buildArchive	If TRUE, build a tar archive of the generated NGCHM. Default is getOption('NGCHM.Build.Archive',TRUE).

Value

The CHM

bmbroom/NGCHMR documentation built on April 18, 2022, 6:52 p.m.