bobverity/MALECOT: Joint estimation of COI and population structure for malaria genetic data

Carries out joint estimation of complexity of infection (COI) and population structure on malaria genetic data. Assumes a simple model in which individuals have genotypes sampled from one or more subpopulations, and the number of genotypes in an individual is equal to the COI, which is also unknown. All unknown parameters are inferred using MCMC.

install.packages("devtools")
library(devtools)
install_github("bobverity/MALECOT")