Description Usage Arguments Details Examples
TODO
1 2 3 4 5 |
project |
a MALECOT project, as produced by the function
|
name |
the name of the parameter set |
lambda |
the shape parameter(s) of the prior on allele frequencies. This
prior is Beta in the bi-allelic case, and Dirichlet in the multi-allelic
case.
|
COI_model |
the type of prior on COI. Must be one of "uniform", "poisson", or "nb" (negative binomial) |
COI_max |
the maximum COI allowed for any given sample |
COI_manual |
A vector of length n (where n is the number of samples)
allowing the COI to be specified manually. Positive values indicate fixed
COIs that should not be updated as part of the MCMC, while -1 values
indicate that COIs should be estimated. Defaults to |
estimate_COI_mean |
whether the mean COI should be estimated for each
subpopulation as part of the MCMC, otherwise the value |
COI_mean |
single scalar value specifying the mean COI for all
subpopulations (see |
COI_dispersion |
the ratio of the variance to the mean of the prior on COI. Only applies under the negative binomial model. Must be >1, as a ratio of 1 can be achieved by using the Poisson distribution |
estimate_error |
whether to estimate error probabilities |
e1 |
the probability of a true homozygote being incorrectly called as a heterozygote |
e2 |
the probability of a true heterozygote being incorrectly called as a homozygote |
e1_max |
the maximum possible value of |
e2_max |
the maximum possible value of |
TODO
1 | # TODO
|
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.