bind_data | Bind data to project |
change_set | Change active parameter set |
check_rmaverick_loaded | Check that rmaverick package has loaded successfully |
delete_set | Delete parameter set |
get_qmatrix | Extract q-matrix for a given analysis |
is.mavproject | Determine if object is of class mavproject |
maverick_file | Import file |
mavproject | Create a new rmaverick project |
new_set | Create new parameter set |
plot_acf | Produce MCMC autocorrelation plot |
plot_alpha | Produce diagnostic plots of parameter alpha |
plot_density | Produce MCMC density plot |
plot_GTI_path | Plot GTI path of current active set |
plot_logevidence_K | Plot log-evidence estimates over K |
plot_logevidence_model | Plot log-evidence estimates over parameter sets |
plot_loglike | Produce diagnostic plots of log-likelihood |
plot_loglike_quantiles | Plot loglike quantiles of current active set |
plot_mc_acceptance | Plot Metropolis coupling acceptance rates |
plot_posterior_K | Plot posterior K |
plot_posterior_model | Plot posterior model |
plot_qmatrix | Plot Q-matrix of current active set |
plot_trace | Produce MCMC trace plot |
print_full | Ordinary print function for class mavproject |
print.mavproject | Custom print function for class mavproject |
recalculate_evidence | Recalculate evidence and posterior estimates |
rmaverick | Analysis of genetic population structure via thermodynamic... |
run_mcmc | Run main MCMC |
sim_data | Simulate data |
summary.mavproject | Print summary for class mavproject |
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