ts_edges: Extract spatio-temporal edge annotation table from a given...
In bodkan/slendr: A Simulation Framework for Spatiotemporal Population Genetics

ts_edges

R Documentation

Extract spatio-temporal edge annotation table from a given tree or tree sequence

Description

Extract spatio-temporal edge annotation table from a given tree or tree sequence

Usage

ts_edges(x)

Arguments

`x`	Tree object generated by `ts_phylo` or a slendr tree sequence object produced by `ts_read`, `ts_recapitate`, `ts_simplify`, or `ts_mutate`

Value

Data frame of the sf type containing the times of nodes and start-end coordinates of edges across space

Examples


init_env()

# load an example model with an already simulated tree sequence
slendr_ts <- system.file("extdata/models/introgression_slim.trees", package = "slendr")
model <- read_model(path = system.file("extdata/models/introgression", package = "slendr"))

# load the tree-sequence object from disk
ts <- ts_read(slendr_ts, model)

# extract an annotated table with (spatio-)temporal edge information
ts_edges(ts)

bodkan/slendr documentation built on Dec. 19, 2024, 11:41 p.m.