Man pages for bodkan/slimr
Parse, process and filter SLiM output files in R
| ancestry_deserts | Extract coordinates of deserts from a given VCF file. |
| ancestry_tracks | Given a chromosome with fixed ancestry markers, infer... |
| fill_lost | Fill in frequencies of alleles lost during the simulation (to... |
| get_gaps | Download the coordinates of centromeres. These are used for... |
| mut_gt | Load mutation genotypes. |
| mut_info | Load mutation information (ignoring genotypes). |
| pipe | Pipe operator |
| read_coordinates | Read positions of simulated coordinates (regions or sites) in... |
| read_genomes | Parse the genome section of the SLiM file into a data frame. |
| read_individuals | Parse the individual section of the SLiM file into a data... |
| read_mutations | Parse the mutation section of the SLiM file into a data... |
| read_populations | Parse the population section of the SLiM file into a data... |
| read_slim | Read SLiM output file generated by the sim.outputFull()... |
| read_vcf | Read a simulated VCF file. |
| transpose_coordinates | Transpose coordinates in the SLiM 0-based coordinate system... |
