API for bomeara/bmhyd
PCM for Hybridization

Global functions
AddHybridization Man page Source code
AddNodeToPhygraph Source code
AkaikeWeight Source code
AlterMatrixUsingDE Source code
BMhyb Man page Source code
BrissetteEtAlCorrection Source code
ComputeAICc Source code
ComputeAllEdges Source code
ComputeConfidenceIntervals Source code
ComputeLikelihood Source code
ComputeMeans Source code
ComputePathPairs Source code
ComputeVCV Source code
ContourFromAdaptiveSampling Source code
ConvertEvonetToIgraphWithNodeNumbers Man page Source code
ConvertExpm1 Source code
ConvertLog1P Source code
ConvertPhyAndFlowToPhygraph Source code
ConvertVectorToMatrix Source code
CreateHybridlessEvonet Man page Source code
GenerateParamLabels Source code
GenerateRandomPositiveDefiniteMatrix Source code
GenerateValues Source code
GetAllPathTopologies Source code
GetHybridNodes Source code
GetProbabilityOfAllPaths Source code
GetProbabilityOfIndividualPath Source code
IsPositiveDefinite Source code
LumpIntoClades Source code
OptimizeThoroughly Source code
PlotConvexHull Source code
PositiveDefiniteOptimizationFn Source code
PruneRecipientsFromPhyGraph Source code
RenumberPhygraph Source code
ScaleAllEdges Source code
SimulateNetwork Man page Source code
SimulateTips Man page Source code
cichlid Man page
nicotiana Man page
plot.BMhybResult Man page Source code
bomeara/bmhyd documentation built on Aug. 15, 2018, 11:14 p.m.