Shows the plot of confidence regions with MLEs indicated (red dots) or a plot of pairs of traits together. Note that for the latter plot, it converts the sampled points to an even grid with interpolation; it sets any points with likelihood worse than ten units to just ten units worse so that you can see the colors near the area of the optimum.
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x |
A BMhyb object (result of a BMhyb() call) |
style |
Either univariate or contour |
focal.color |
Color for the point showing the maximum likelihood estimate |
inregion.color |
Color for univariate plot, points in the good region |
outregion.color |
Color for univariate plot, points in the bad region |
gradientworst.color |
Color for contour plot, color of the worst contour region |
gradientbest.color |
Color for contour plot, color of the best contour region |
contour.color |
Color showing the contour line for the best threshold |
contour.threshold |
What delta log likelihood to use for the best/worst threshold for the contour plot |
nrow |
The number of rows to plot in the grid for contour (will set it automatically if NULL) |
... |
Other arguments to pass to plot (for univariate only; the contour plot uses ggplot2) |
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