Man pages for bomeara/bmhyd
Comparative Methods for Phylogenetic Networks
| AddHybridization | Add hybrid events to a phy.graph |
| BMhyb | Optimize model |
| BMhybExhaustive | Exhaustively evaluate models |
| cichlid | Cichlid dataset |
| ComputeLikelihood | Compute the likelihood for a set of parameters |
| ComputeVCV | Compute the variance-covariance matrix |
| ConvertEvonetToIgraphWithNodeNumbers | Convert an evonet object into igraph |
| CreateHybridlessEvonet | Convert phylo object to evonet |
| GetConvexHull | Get convex hull at a given threshold |
| MergeExhaustiveForPlotting | Function to merge adaptive sampling sims for plotting |
| nicotiana | Nicotiana dataset |
| plot.BMhybExhaustiveResult | Plot BMhybExhaustive result |
| plot.BMhybResult | Plot BMhyb result |
| print.BMhybExhaustiveResult | Print BMhybExhaustive result |
| print.BMhybResult | Print BMhyb result |
| SimulateNetwork | Simulate a phylogenetic network |
| SimulateTips | Simulate trait data |
| summary.BMhybExhaustiveResult | Summarize BMhybExhaustive result |
| summary.BMhybResult | Summarize BMhyb result |
