phylo_signal: Estimates phylogenetic signal on spectra

In bomeara/evolspec: Evolution of leaf spectra

Description

Estimates phylogenetic signal on spectra

Usage

phylo_signal(tree, spec, method = c("lambda", "K"), by_band = TRUE,
  se = NULL)

Arguments

tree	A phylogeny of class "phylo"
spec	A matrix with spectral data, where the first column is are species names that match tip names of the tree.
method	Either "lambda" (Pagel's) or "K" (Bloomberg's).
by_band	Boolean. The default TRUE estimates signal for each wavelength independently. If FALSE, signal is estimated for the spectrum as a whole using method = "lambda" ("K" not availiable if by_band = FALSE).
se	Optional. A matrix of spectral standard erros returned by aggregate_by_species'

Value

A two column data.frame with the estimated signal in the first column and a p-value from a significance test in the second column.

bomeara/evolspec documentation built on May 12, 2019, 11:34 p.m.