Description Usage Arguments Author(s) References Examples
View source: R/phrapl-utilities.R
This function uses the $snps element of the list returned by ReadStructureData() and creates a set of trees you can use in GridSearch or elsewhere with the doSNP=TRUE argument set. It returns a multiphylo object. Missing data (-9 in the original file) are removed.
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snps |
The output of ReadStructureData, the snps object |
Brian O'Meara, Bryan Carstens, Nathan Jackson, Ariadna Morales-Garcia
Maintainer: Brian O'Meara <bomeara@utk.edu>
O'Meara, B.C., N. Jackson, A. Morales-Garcia, and B. Carstens (2014) Phrapl in prep.
1 | #snptrees <- ConvertStructureDataToTrees(ReadStructureData(file="mydata")$snps)
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