Data: Cached migrationArrays

In bomeara/phrapl: Phylogeography using Approximate Likelihood

Description

These are precomputed migrationArrays that have been generated using GenerateMigrationIndividuals according to specific critera. All the model sets avaiable below contain only models with two type of parameters: coalescence times and migration rates (i.e., equal and stable population sizes are invoked in all models) and fully resolved trees (i.e., forceTree = TRUE).

To load a migrationArray with 3 populations, a total maximum of three parameters (maxK = 3), a maximum of one migration rate (MaxMigrationK = 1), and the possibility of assymetrical migration (forceSymmetricalMigration = FALSE), type

data(MigrationArray_3pops_maxMigrationK1_asymmetrical).

To load a migrationArray with three populations, a total maximum of three parameters (maxK = 3), a maximum of one migration rate (MaxMigrationK = 1), and only symmetrical migration (forceSymmetricalMigration = TRUE), type

data(MigrationArray_3pops_maxMigrationK1).

To load a migrationArray with three populations, a total maximum of four parameters (maxK = 4), a maximum of two migration rates (MaxMigrationK = 2), and the possibility of assymetrical migration (forceSymmetricalMigration = FALSE), type

data(MigrationArray_3pops_maxMigrationK2_asymmetrical).

To load a migrationArray with three populations, a total maximum of four parameters (maxK = 4), a maximum of two migration rates (MaxMigrationK = 2), and only symmetrical migration (forceSymmetricalMigration = TRUE), type

data(MigrationArray_3pops_maxMigrationK2).

To load a migrationArray with three populations, a total maximum of five parameters (maxK = 5), a maximum of three migration rates (MaxMigrationK = 3), and the possibility of assymetrical migration (forceSymmetricalMigration = FALSE), type

data(MigrationArray_3pops_maxMigrationK3_asymmetrical).

To load a migrationArray with three populations, a total maximum of five parameters (maxK = 5), a maximum of three migration rates (MaxMigrationK = 3), and only symmetrical migration (forceSymmetricalMigration = TRUE), type

data(MigrationArray_3pops_maxMigrationK3).

To load a migrationArray with three populations, a total maximum of six parameters (maxK = 6), a maximum of four migration rates (MaxMigrationK = 4), and the possibility of assymetrical migration (forceSymmetricalMigration = FALSE), type

data(MigrationArray_3pops_maxMigrationK4_asymmetrical).

To load a migrationArray with four populations, a total maximum of four parameters (maxK = 4), a maximum of one migration rate (MaxMigrationK = 1), and only symmetrical migration (forceSymmetricalMigration = TRUE), type

data(MigrationArray_4pops_maxMigrationK1).

To load a migrationArray with four populations, a total maximum of five parameters (maxK = 5), a maximum of two migration rates (MaxMigrationK = 2), and only symmetrical migration (forceSymmetricalMigration = TRUE), type

data(MigrationArray_4pops_maxMigrationK2).

Examples

  #Load migrationArray		
  data(MigrationArray_3pops_maxMigrationK1_asymmetrical)
  #Inspect the number of models
  length(migrationArray)

bomeara/phrapl documentation built on Feb. 8, 2021, 6:45 p.m.