generate_sample: Generate a sample of species, weighted by their score

In bomeara/popularitree: Subsamples a tree to get popular taxa

Description

Generate a sample of species, weighted by their score

Usage

generate_sample(taxon_scores, ntax, phy, pd_weighting, min.prob = 0.01,
  max.prob = 0.99)

Arguments

taxon_scores	The vector of scores for taxa
ntax	The number of taxa you want returned
phy	Phylogeny to prune
pd_weighting	How much to weight the pd vs the popularity
min.prob	The minimum probability of sampling for a taxon
max.prob	The maximum probability of sampling for a taxon

Value

A list: selected=vector of names of sampled taxa to include, and score=sum of the taxon metrics for these taxa

bomeara/popularitree documentation built on May 19, 2019, 10:48 p.m.