convert_phylo_to_plotly: Convert from a phylo object to a set of Source, Target,...
In bomeara/santree: Creates Sankey Diagrams from Phylogenetic Trees
Description
Usage
Arguments
Value
Description
Convert from a phylo object to a set of Source, Target, Value, Node Label for plotly sankey diagram
convert data to data frame for use in plotly sankey diagram
Usage
1
convert_phylo_to_plotly(phy, tip.weights = NULL, erase.labels = FALSE)
Arguments
phy
The tree in ape phylo format
tip.weights
Optionally a vector of the number of taxa each tip represents. If present, the final width matches this. It should have labels matching the taxon names
erase.labels
If TRUE, erase any node labels; otherwise, they will be used for naming nodes if present
Value
A list of links and nodes for sankey plot
bomeara/santree documentation built on May 30, 2019, 1:21 p.m.
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Description Usage Arguments Value
Description
Convert from a phylo object to a set of Source, Target, Value, Node Label for plotly sankey diagram convert data to data frame for use in plotly sankey diagram
Usage
1 | convert_phylo_to_plotly(phy, tip.weights = NULL, erase.labels = FALSE)
|
Arguments
phy |
The tree in ape phylo format |
tip.weights |
Optionally a vector of the number of taxa each tip represents. If present, the final width matches this. It should have labels matching the taxon names |
erase.labels |
If TRUE, erase any node labels; otherwise, they will be used for naming nodes if present |
Value
A list of links and nodes for sankey plot
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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