convert_phylo_to_sankey: Convert from a phylo object to a set of source, value, and...
In bomeara/santree: Creates Sankey Diagrams from Phylogenetic Trees
Description
Usage
Arguments
Value
Description
This will create information for a Sankey diagram. The output is a dataframe: one column for the name of the starting node, one column for the flow from that node to the third column, the name of the ending node.
If nodelabels exist, they will be used for node names, otherwise numbers will be used.
Usage
1
2
convert_phylo_to_sankey(phy, tip.weights = NULL, erase.labels = FALSE,
convert.numbers = TRUE)
Arguments
phy
The tree in ape phylo format
tip.weights
Optionally a vector of the number of taxa each tip represents. If present, the final width matches this. It should have labels matching the taxon names
erase.labels
If TRUE, erase any node labels; otherwise, they will be used for naming nodes if present
convert.numbers
If TRUE, convert node numbers to labels if possible
Value
Data.frame with columns for source, value, and target
bomeara/santree documentation built on May 30, 2019, 1:21 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value
Description
This will create information for a Sankey diagram. The output is a dataframe: one column for the name of the starting node, one column for the flow from that node to the third column, the name of the ending node. If nodelabels exist, they will be used for node names, otherwise numbers will be used.
Usage
1 2 | convert_phylo_to_sankey(phy, tip.weights = NULL, erase.labels = FALSE,
convert.numbers = TRUE)
|
Arguments
phy |
The tree in ape phylo format |
tip.weights |
Optionally a vector of the number of taxa each tip represents. If present, the final width matches this. It should have labels matching the taxon names |
erase.labels |
If TRUE, erase any node labels; otherwise, they will be used for naming nodes if present |
convert.numbers |
If TRUE, convert node numbers to labels if possible |
Value
Data.frame with columns for source, value, and target
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.