Files in bomeara/selac

Selection Models for Amino Acid and/or Codon Evolution

.Rbuildignore

.gitignore

.travis.yml

DESCRIPTION

NAMESPACE

R/marginalRecon.R R/modelAdequacy.R R/nzp.R R/plot.R R/selac.R R/selacSim.R R/selon.R README.md

data/archosaurs.rda

data/non_zero_pos.rda

data/yeast.rda

docs/authors.html

docs/betadocumentation/ComputeEquilibriumCodonFrequencies.Rd

docs/betadocumentation/PlotEquilbriumCodonDistribution.Rd docs/betadocumentation/PlotExpectedFitness.Rd docs/betadocumentation/PlotGeneSiteInfo.Rd docs/betadocumentation/PlotMutationFitnessSpectra.Rd docs/betadocumentation/PlotPerAAFitness.Rd

docs/index.html

docs/jquery.sticky-kit.min.js

docs/link.svg

docs/pkgdown.css

docs/pkgdown.js

docs/reference/ComputeEquilibriumCodonFrequencies.html

docs/reference/ComputeMutationFitnesses.html

docs/reference/GetAdequateManyReps.html

docs/reference/GetAdequateSelac.html

docs/reference/GetFunctionality.html

docs/reference/GetMarginalAllGenes.html

docs/reference/GetPartitionOrder.html

docs/reference/GetSelacPhiCat.html

docs/reference/GetSelacSiteLikelihoods.html

docs/reference/LineMutationFitnessSpectra.html

docs/reference/NucSimulator.html

docs/reference/PlotEquilbriumCodonDistribution-2.png

docs/reference/PlotEquilbriumCodonDistribution.html

docs/reference/PlotExpectedFitness-183.png

docs/reference/PlotExpectedFitness.html

docs/reference/PlotGeneSiteInfo.html

docs/reference/PlotMutationFitnessSpectra-183.png

docs/reference/PlotMutationFitnessSpectra.html

docs/reference/PlotPerAAFitness-303.png

docs/reference/PlotPerAAFitness.html

docs/reference/SelacHMMOptimize.html

docs/reference/SelacOptimize.html

docs/reference/SelacSimulator.html

docs/reference/SelacSimulatorEvolvingRates.html

docs/reference/SelonLargeOptimize.html

docs/reference/SelonOptimize.html

docs/reference/SelonSimulator.html

docs/reference/SupportRegion.html

docs/reference/index.html

docs/reference/internal.html

docs/reference/yeast.html

inst/extdata/gene1Yeast.fasta

inst/extdata/rokasYeast.tre

man/.Rapp.history

man/GetAdequateManyReps.Rd man/GetAdequateSelac.Rd man/GetFunctionality.Rd man/GetMarginalAllGenes.Rd man/GetPartitionOrder.Rd man/GetSelacPhiCat.Rd man/GetSelacSiteLikelihoods.Rd man/NucSimulator.Rd man/PlotEquilbriumCodonDistribution.Rd man/PlotExpectedFitness.Rd man/PlotGeneSiteInfo.Rd man/PlotMutationFitnessSpectra.Rd man/PlotPerAAFitness.Rd man/SelacHMMOptimize.Rd man/SelacHMMSimulator.Rd man/SelacOptimize.Rd man/SelacSimulator.Rd man/SelacSimulatorEvolvingRates.Rd man/SelonHMMOptimize.Rd man/SelonOptimize.Rd man/SelonSimulator.Rd man/archosaur.Rd man/internal.Rd man/non_zero_pos.Rd man/yeast.Rd tests/testthat.R

tests/testthat/gene1Yeast.fasta

tests/testthat/rokasYeast.tre

tests/testthat/test_likelihood.R tests/testthat/test_utility.R

bomeara/selac documentation built on Nov. 11, 2021, 12:37 a.m.