Files in bomeara/selac
Selection Models for Amino Acid and/or Codon Evolution

.travis.yml
DESCRIPTION
NAMESPACE
R/marginalRecon.R R/modelAdequacy.R R/plot.R R/selac.R R/selacSim.R R/selon.R README.md
data/yeast.rda
docs/authors.html
docs/betadocumentation/ComputeEquilibriumCodonFrequencies.Rd
docs/betadocumentation/PlotEquilbriumCodonDistribution.Rd
docs/betadocumentation/PlotExpectedFitness.Rd
docs/betadocumentation/PlotGeneSiteInfo.Rd
docs/betadocumentation/PlotMutationFitnessSpectra.Rd
docs/betadocumentation/PlotPerAAFitness.Rd
docs/index.html
docs/jquery.sticky-kit.min.js
docs/link.svg
docs/pkgdown.css
docs/pkgdown.js
docs/reference/ComputeEquilibriumCodonFrequencies.html
docs/reference/ComputeMutationFitnesses.html
docs/reference/GetAdequateManyReps.html
docs/reference/GetAdequateSelac.html
docs/reference/GetFunctionality.html
docs/reference/GetMarginalAllGenes.html
docs/reference/GetPartitionOrder.html
docs/reference/GetSelacPhiCat.html
docs/reference/GetSelacSiteLikelihoods.html
docs/reference/LineMutationFitnessSpectra.html
docs/reference/NucSimulator.html
docs/reference/PlotEquilbriumCodonDistribution-2.png
docs/reference/PlotEquilbriumCodonDistribution.html
docs/reference/PlotExpectedFitness-183.png
docs/reference/PlotExpectedFitness.html
docs/reference/PlotGeneSiteInfo.html
docs/reference/PlotMutationFitnessSpectra-183.png
docs/reference/PlotMutationFitnessSpectra.html
docs/reference/PlotPerAAFitness-303.png
docs/reference/PlotPerAAFitness.html
docs/reference/SelacHMMOptimize.html
docs/reference/SelacOptimize.html
docs/reference/SelacSimulator.html
docs/reference/SelacSimulatorEvolvingRates.html
docs/reference/SelonLargeOptimize.html
docs/reference/SelonOptimize.html
docs/reference/SelonSimulator.html
docs/reference/SupportRegion.html
docs/reference/index.html
docs/reference/internal.html
docs/reference/yeast.html
man/.Rapp.history
man/GetAdequateManyReps.Rd man/GetAdequateSelac.Rd man/GetFunctionality.Rd man/GetMarginalAllGenes.Rd man/GetPartitionOrder.Rd man/GetSelacPhiCat.Rd man/GetSelacSiteLikelihoods.Rd man/NucSimulator.Rd man/SelacHMMOptimize.Rd man/SelacOptimize.Rd man/SelacSimulator.Rd man/SelacSimulatorEvolvingRates.Rd man/SelonHMMOptimize.Rd man/SelonOptimize.Rd man/SelonSimulator.Rd man/internal.Rd man/yeast.Rd
src/Makevars.in
src/Makevars.win
src/registerDynamicSymbol.c
src/selacHMM.c
tests/testthat.R
tests/testthat/gene1Yeast.fasta
tests/testthat/rokasYeast.tre
tests/testthat/test_likelihood.R tests/testthat/test_utility.R
bomeara/selac documentation built on Dec. 15, 2017, 9:47 p.m.